Calculating dN/dS with NGS data

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vitor

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Join Date: Apr 2015

Posts: 5
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#1

Calculating dN/dS with NGS data

07-17-2015, 08:37 AM

Hello,

I have DNA reads mapped in the genome reference in the format .SAM, i need to calculate dN/dS in each ORF.
How can I calculate this?
Someone suggests a script or software?
Tags: non-synonymous, snp, substitution, synonymous
ymc

Senior Member

Join Date: Mar 2010

Posts: 496
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#2

08-03-2015, 08:39 AM

You need ORFs of the same gene from many different species to calculate dN/dS
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