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  • sgoetz
    Member
    • May 2010
    • 11

    #16
    If you want to know which sequences (transcripts/unigenes/protein) belong to which biological function/gene ontology term with Blast2GO you can use the "Combined Graph Function" and then export the graph as .txt file (from the side-panel). This gives you a spreadsheet with a list of all sequence IDs for each GO terms (one GO per row) for all GO levels and categories. This means direct and indirect functional annotations for MF, CC and BP.
    Last edited by sgoetz; 09-23-2015, 07:08 AM.

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    • sgoetz
      Member
      • May 2010
      • 11

      #17
      A Blast2GO User Manual can be found here: https://www.blast2go.com/images/b2g_...ser_manual.pdf

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      • jsong02
        Junior Member
        • Mar 2018
        • 1

        #18
        I have a same question five years later! Can you let me know who did you approached the problem in the end? Thanks!

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