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Old 03-06-2016, 02:10 AM   #30
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Location: perth

Join Date: Mar 2016
Posts: 2
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Hi Brian,

Thanks very much for your quick reply. According to you suggestion, I ran reformat.sh to calculate the exact number of bases in all files, but the reason seems not relating to "compression" very much! See below,
1)reads before running bbnorm.sh:
reads 1
Input : 2728414 reads 336952602 bases
reads 2
Input: 2728414 reads 338676300 bases

2) reads after...:
reads 1
Input: 1307784 reads 162040282 bases
reads 2
Input: 1307784 reads 162053968 bases
excluded reads
Input: 767030 reads 95017289 bases

Thanks,
Xiao
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