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  • vilperte
    Junior Member
    • Aug 2014
    • 5
    #1

    CummeRbund - PCA

    Hello,

    I'm using the PCA plot function implemented in the CummeRbund package. The package is very user-friendly, however, I can't find a way to get the eigenvalues or the percentage of each principal component (PC1, PC2, PC3...). Does anyone know how to retrieve this information, if possible?

    I would appreciate any feedback.

    Thanks in advance!

    Kind regards,

    Vinicius
    Tags: cummerbund, cummerbund plots, eigenvalue, pca
  • angelica_16
    Junior Member
    • Mar 2016
    • 1
    #2
    eigenvalues PCA Cummerbund

    Hello Vinicious

    Did you got an asnwer to your question?
    I am wondering the same about the eigenvectors in the Cumerbund PCA

    Comment

    • vilperte
      Junior Member
      • Aug 2014
      • 5
      #3
      Hi,

      No, I didn't get any feedback.

      What I did was to extracted the geneset of my interest from CummeRbund and plot the PCAs using the ade4 package. It is also a very easy package to work with.

      Best,

      Vinicius

      Comment

      • cbaudo
        Member
        • Jan 2013
        • 21
        #4
        vilperte, would you mind sharing your workflow for obtaining that geneset and using it with ade4? thank you

        Comment

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