use of BaseSpace app for outside data

[wingtec]

Hi All,

Has anyone tried to import outside work into a project in BaseSpace and then use the Apps in BaseSpace to process the data, such as tophat?

Thanks

Wing

[westerman]

Yes, I have tried. Did not work as of about 6 months ago.

[ScottC]

Yes. What in particular did you want to know?

[wingtec]

I am just wondering if I can take a piggy-back of the APPs in BaseSpace for analysis of, say, RNA-Seq data, which were generated outside of BaseSpace.

Thanks

W

[bbm]

I am just wondering if I can take a piggy-back of the APPs in BaseSpace for analysis of, say, RNA-Seq data, which were generated outside of BaseSpace.

Thanks

W

I have the same question....any answers?

[fanli]

Seems like more work than it's worth IMO. Why not use Galaxy if that's what you're looking for?