how to install GATK through terminal in ubuntu?
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The GATK distribution is a jar file, it should run if you have java installed. -
The information you are looking for can be found here: https://software.broadinstitute.org/...quickstart.phpComment
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Gatk
can i input .sam file to GATK in linux??Comment
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GATK is one of the best documented software in Bioinformatics, are you even making an effort to go to their webpage and reading tutorials or documentation?Last edited by vivek_; 01-25-2017, 05:35 AM.Comment
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But reading is hard and takes time, therefore it's easier to just ask people who volunteer online to help and waste their time instead.Originally posted by vivek_ View PostComment
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error while running
when ever i try to run "java -jar GeomeAnalysis.jar" its showing "unable to access jarfile GenomeAnalysisTK.jar" but when i use "java $GATK -h" gatk environment is coming..please help me in running the toolComment
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Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.
We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing...
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