read density (Chip-seq data)

nhaus

Junior Member

Join Date: Mar 2017

Posts: 4
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#1

read density (Chip-seq data)

03-10-2017, 03:45 AM

Hey there,
I already read numerous papers where the term "read density" appeared. But they never explain what this means :evil:
Often in the context of Chip-seq. For example: Quantitative read density analysis of H3K27ac Chip-seq data...

I hope you can help me
Tags: chip-seq, read density
dpryan

Devon Ryan

Join Date: Jul 2011

Posts: 3478
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#2

03-13-2017, 01:05 AM

"Alignment Dichte", to make up a phrase in quasi-German. The reads/alignments are from the sequencing data, the density simply refers to how many are in a particular area. In this case, it's presumably talking about how many reads/alignments happen to be inside of peaks in ChIPseq data.
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read density (Chip-seq data)

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