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  • cbaudo
    Member
    • Jan 2013
    • 21
    #1

    Visualize just non-synonymous variants in IGV

    Hello,

    I used snpeff to annotate a set of variants and I would like to only visualize where a particular type of variant (non-synonymous mutations) localize on the chromosomes in the IGV.

    Is there a method for doing this from the vcf file or do I need to extract the non-synonymous variants first?

    cheers,
    Charles
    Tags: igv, snps, visualization tools
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