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  • quantic
    Junior Member
    • Mar 2017
    • 2

    #1

    What does 'top=?' mean in a FASTA header?

    I pipeline I am working with has a step which says:

    echo "Rename OTU sequences. All OTU with 'top=?' regarded as 'Other'"

    And then calls a python script that filters all sequences from a FASTA file containing 'top=?' on its header. I am wondering what this does exactly as I can't find any documentation about it. Thanks
  • Brian Bushnell
    Super Moderator
    • Jan 2014
    • 2709

    #2
    This is unrelated to fasta headers, and just a quirk of your specific pipeline. If there's no documentation, you'll need to ask the person who wrote the pipeline.

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