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  • puneet_shivanand
    Junior Member
    • Oct 2017
    • 2

    #1

    1000 genomes data format

    Hello, Can i get a brief overview on data that is stored in 1000 genomes phase 3 dataset for a single sample name such as HG00113 there a multitude of fastq paired end reads in their ftp server

    ERR020088_1.filt.fastq.gz 24.6 GB
    ERR020088_2.filt.fastq.gz 24.7 GB
    ERR229776.filt.fastq.gz 360 MB
    ERR229776_1.filt.fastq.gz 9.4 GB
    ERR229776_2.filt.fastq.gz 9.7 GB
    SRR070517.filt.fastq.gz 7.4 MB
    SRR070517_1.filt.fastq.gz 2.2 GB
    SRR070517_2.filt.fastq.gz 2.3 GB
    SRR070802.filt.fastq.gz 6.8 MB
    SRR070802_1.filt.fastq.gz 2.2 GB
    SRR070802_2.filt.fastq.gz 2.3 GB

    can someone explain as how to interpret the data is it the same sample or different samples that are included in the same run accession.

    why do i get multiple set of paired end reads ??
    Last edited by puneet_shivanand; 11-02-2017, 09:07 PM.

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