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  • iltisanni
    Member
    • Mar 2017
    • 21
    #1

    Database for pathogenomics

    Hi,

    we sequenced some organisms and want to know whether they are human-pathogen (toxic).
    Does anyone know if a special database exists where I can scan my assembly scaffolds and check if my organism is pathogen?
    Last edited by iltisanni; 01-15-2018, 10:52 PM.
    Tags: None
    • iltisanni
      Member
      • Mar 2017
      • 21
      #2
      For those of you who are searching for something like me.

      VFDB: Virulence Factor Database
      http://www.mgc.ac.cn/VFs/main.htm
      Virulence factors are defined as those factors or agents that allow an organism to become established in a host or to maintain the disease state once an infection has been established. VFDB is a large collection of VFs from various medical significant bacterial pathogens


      I think this db is quite helpful and you can download it to yout local drive.

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