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  • fripeki
    Junior Member
    • Apr 2019
    • 5

    #1

    RepeatScout errors

    Hello everybody
    I was trying to use RepeatScout. I was following some steps one by one to analyze my sequences.
    Here there are the passages:

    Repeatscout run: using `fname.fa`

    1) `./build_lmer_table -l 15 -sequence fname.fa -freq fname.freq`

    2) `./RepeatScout -sequence fname.fa -output fnamescout.fa -freq fname.freq -l 14`

    Then the next step would be:

    3) `cat fnamescout.fa | ./filter-stage-1.prl> fnamescout_filtered.fa`

    but it generated an empty output file .fasta



    I checked if `TRF` was installed, then I installed `NSEG`. It could be okay.
    What's wrong?
    Last edited by fripeki; 04-10-2019, 05:36 AM. Reason: update

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