Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • rbm_rk
    Junior Member
    • Apr 2010
    • 1

    #1

    Velvet -output format

    Dear friends,

    I have recently started using velvet. On running velveth i get two files Roadmap and Sequences. Can anybody tell me what the internal structure of these file format means, especially the Roadmap file where you get the output:
    ROADMAP 301
    45 12 6 8
    -1 12 0 -1
    -1 12 0 -1

    Thanks in advance

    Ratnesh
  • Awesome
    Bioinformatician
    • Aug 2009
    • 7

    #2
    I would also like to know this.

    And also, if anyone could tell me how to run velvet on illumina's paired-end bustard qseq.txt files that would be great.
    Last edited by Awesome; 07-28-2010, 10:09 AM.

    Comment

    Latest Articles

    Collapse

    • SEQadmin2
      Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
      by SEQadmin2



      Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

      Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
      ...
      10-14-2026, 09:55 AM
    • SEQadmin2
      New Genomics Technologies Take Aim at Long-Standing Limits
      by SEQadmin2


      Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

      We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
      ...
      09-28-2026, 10:25 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by SEQadmin2, 10-15-2026, 10:52 AM
    0 responses
    26 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-14-2026, 05:39 AM
    0 responses
    33 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-13-2026, 09:56 AM
    0 responses
    31 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-09-2026, 11:14 AM
    0 responses
    28 views
    0 reactions
    Last Post SEQadmin2  
    Working...