Compatibility of QIAseq FX DNA library prep kit for Illumina miseq

[djung]

Hello

I'm totally new to Illumina miseq and our lab is going to do whole genome sequencing for E. coli and S. aureus using Illumina miseq v3. I thought we were going to use Nextera kit for library prep but for some reasons, we will have to use QIAseq FX DNA library prep kit.

Is there anyone who is familiar with QIAseq FX library prep kit? If so, is there any problem with compatibility (e.g. pipeline-Can I still use Basespace?, any trouble for using Qiaseq library amplification primer mix?)

Thanks very much in advance!

[Bukowski]

If you look at the handbook you will see that it is for Illumina instruments.

[luc]

No compatibility problems at all.