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Has anyone tried the bfast.submit.pl tool to submit jobs to an SGE cluster? If yes, can you provide an example config script?
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Dear,
i have the same problem.
Did you solve it?
If yes, please can you shared your script?
I sent an e-mail to the group with object "Bfast parallel running".
Thanks a lot -
There is no tutorial and it is meant for advanced users. To obtain the XML schema, use the "--schema" command line option. Modify it appropriately (you may need to read the perl script!) making sure you create an XML file too.Comment
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Hi,
I am trying to run bfast in PBS. The script has to be written in such a way to combine all the steps of bfast into a single PBS script and submit the job. Please help in writing the pbs script to run bfast in cluster computing.Comment
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What is your specific question? What have you already tried? Have you created an XML file according to the schema? Do you have a local bioinformatician that can help?Originally posted by Venkat View PostComment
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Sorry. I do not have a bioinformatician to help. My question is how to run bfast in cluster system. I tried running in local computer it works well with the example. but I am not sure of working with remote cluster machine.Comment
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It is beyond the scope here to describe how to run such programs on a remote cluster machine. You will need to contact someone who can help (a bioinformatician, a systems administrator, or someone with the requisite knowledge). Your request is similar to me saying I learned to run a PCR, can you now tell me how to do library preparation for my DNA sequencer?Originally posted by Venkat View PostComment
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