GEO sequence count - SEQanswers

You are currently viewing the SEQanswers forums as a guest, which limits your access. Click here to register now, and join the discussion

X

johnsequence

Member

Join Date: Jan 2010

Posts: 22
Share

Post
#1

GEO sequence count

05-12-2011, 07:15 AM

Hello, anyone

It is an easy question, but I do not know. How can I use the GEO sequence count file that can be downloaded from GEO raw file? The file format contains two columns, first is sequence, second is count, like ATGCTCCCTTAA 2340. Do I need realign them back to genome or directly use them? Thanks.
John
Tags: None

Previous template Next

16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?

by SEQadmin2

NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification, detection...
- Channel: Articles
10-30-2026, 06:46 AM
Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t

by SEQadmin2

Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating...
- Channel: Articles
10-14-2026, 09:55 AM

	Topics		Statistics	Last Post
	Genome Sequencing Reveals Large, Repeat-Rich DNA in Trapdoor Spider Named for Stephen Colbert by SEQadmin2 Started by SEQadmin2, 10-28-2026, 09:57 AM		0 responses 36 views 0 reactions	Last Post by SEQadmin2 10-28-2026, 09:57 AM
	Single-Cell Sequencing of 5 Million Immune Cells Links Genetic Variants to Disease by SEQadmin2 Started by SEQadmin2, 10-28-2026, 09:51 AM		0 responses 22 views 0 reactions	Last Post by SEQadmin2 10-28-2026, 09:51 AM
	Exeter-Led Study Maps What an Average Human Genome Looks Like by SEQadmin2 Started by SEQadmin2, 10-22-2026, 11:13 AM		0 responses 72 views 0 reactions	Last Post by SEQadmin2 10-22-2026, 11:13 AM
	Long-Read Sequencing Uncovers Cancer Mutations Conventional Testing Missed by SEQadmin2 Started by SEQadmin2, 10-22-2026, 10:48 AM		0 responses 48 views 0 reactions	Last Post by SEQadmin2 10-22-2026, 10:48 AM

Working...