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any verdicts on this one? Is it doing better than Cufflinks?
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I haven't benchmarked it thoroughly yet so I don't have an answer to your second question, but one nice feature with it is that it can generate a simulated RNA-seq dataset to compare different quantifiers on (although one might not want to include RSEM itself in such a comparison). -
Yes I tried this. However, I had problems with some places that took me too long to solve. But in the end I managed to get it done. Thank you.Comment
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Data variability is still an issue in sequencing technologies despite the advances in reproducibility and accuracy of these platforms. But the problem does not originate in the sequencing itself, but in the previous steps, before the sample reaches the sequencer.
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