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  • vinay052003
    Member
    • Jan 2010
    • 59

    #1

    FASTX quality plot error

    Hi all,
    I am using FASTX tool kit to for the quality control. When I run fastq_quality_boxplot_graph.sh script on the quality stats file, I get following two strange errors:

    line 0: undefined variable: inside

    and

    gnuplot> plot 'my_input_file' using 1:7:11:12:9 with candlesticks lt 1 lw 1 title 'Quartiles' whiskerbars, '' using 1:8:8:8:8 with candlesticks lt -1 lw 2 title 'Medians'
    ^
    line 0: ';' expected



    Any suggestions?

    Thanks.
  • teriri
    Junior Member
    • Nov 2011
    • 1

    #2
    Hi Vinay -- did you ever resolve this issue? I am encountering it as well.

    Thanks

    -T

    Comment

    • vinay052003
      Member
      • Jan 2010
      • 59

      #3
      I figured my GNU plot libraries were missing. I installed them and it worked.

      Comment

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