Tweet
We are looking at a small pilot project, 50-100 exomes (we prefer Illumina based core). Already have some exp with OtoGenetics but their SureSelect capture based option seems pricey. Anyone ? Thanks (not sure if that is the right category to ask for it but....)
-
Last edited by memento; 02-15-2012, 09:54 AM. -
-
Comment
-
We've tested a number of exome service providers and are now going to regularly use Axeq.
We were quoted <£700 per exome using Nimblegen's latest capture.
We had a number of communication problems and delays with BGI.Comment
-
What was the matter...wasn't Ryan getting back to you in time?Originally posted by TonyBrooks View Post
Comment
-
$999 exome
We do $999 at the Columbia Genome Center. That includes all reagents, Agilent SureSelect XT Human All Exon v.2 44Mb, Library preparation, 60X depth mapped coverage, 100bp Paired End reads, sequenced on Illumina HiSeq2000 instruments, 2 months data storage, QC, reads mapped to the human reference genome, single nucleotide variants and short insertions/deletions, basic functional annotation of the variants, and summary statistics. Our average turnaround was 55 days last quarter.
I can send you recommendations from PIs who use our service. We take orders from all over the world.
We will be happy to answer any questions at [email protected]
Our FAQ is here:
Last edited by ocouronne; 02-21-2012, 10:58 AM.Comment
-
so can you detail the problems?maybe we can give you feedback.Originally posted by TonyBrooks View PostComment
-
If he is in the UK, shouldn't your European subsidiary be addressing these issues? Or do they lack the competence to do so?Originally posted by Gone View Post
Comment
-
Yeah,U're right!BGI-Europe will handle all issues in local region.Originally posted by Geneus View PostIf he is in the UK, shouldn't your European subsidiary be addressing these issues? Or do they lack the competence to do so?
Anyway,we'll try our best to do any kinds of problems.
you know customer forever is God!
Comment
-
Yes...that's the way Mr. Mason would want it.Originally posted by Gone View PostYeah,U're right!BGI-Europe will handle all issues in local region.
Anyway,we'll try our best to do any kinds of problems.
you know customer forever is God!
Comment
-
Best and smartest sequencing facility around is Expression analysisComment
-
This should (perhaps obviously) be noted as biased.Originally posted by kamichailo View PostComment
-
-
Genomics studies in neuroscience face a special challenge due to the brain’s complexity and scarcity of samples. Mapping changes in cell type and state using conventional next-generation sequencing methods remains challenging. Advances in technologies like single-cell sequencing, spatial transcriptomics, and long-read sequencing have opened the door to deeper studies of the brain and diseases like Alzheimer’s, amyotrophic lateral sclerosis (ALS), and schizophrenia.
...07-09-2026, 11:10 AM -
Cancer survival rates have significantly increased in the last few decades in the United States, reaching a combined 70% 5-year survival rate by 2021. Behind this number, there are years of research to find new therapies, drug targets, and early detection methods. But there is one core challenge that keeps slowing down these advances, and it’s about drug resistance.
There is no single reason why many patients don’t respond to treatment as expected. Cancer is...07-08-2026, 05:17 AM -
Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.07-01-2026, 11:43 AM
Comment