Unconfigured Ad

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts
  • qingdaoalbert
    Junior Member
    • Feb 2012
    • 4

    errors during installing mira on suse 10

    I’m trying to comply mira 3.4.1 on a cluster computer with suse 10 Linux system. We’ve upgraded boost and flex to the latest version before complying. Since I do not have the administrator authority, necessary libs were installed under $Home/bin.
    The locations of the newly-installed libs were informed using option switches as listed below: “./configure --prefix=/public/home/zhaozengfang/software/mira --with-boost=/public/home/zhaozengfang/software/boost148/ --with-boost-libdir=/public/home/zhaozengfang/software/boost148/lib/ --with-tcmalloc-dir=/public/home/zhaozengfang/software/gperf/lib --enable-64=yes --enable-mirastatic”. It seems OK for this step. The system reported that everything looks good.
    However, during make step, several errors occurred. I failed to install mira on the MPI computer. The error message were given:

    ##########################
    g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" -DPACKAGE_VERSION=\"3.4.0.1\" -DPACKAGE_STRING=\"mira\ 3.4.0.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" -DVERSION=\"3.4.0.1\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_NAMESPACES=/\*\*/ -DHAVE_STD=/\*\*/ -DHAVE_STL=/\*\*/ -DHAVE_BOOST=/\*\*/ -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ -DDEVELOPMENTVERSION=0 -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -DPUBLICQUIET -DAJ_Linux64 -I/public/home/zhaozengfang/software/mira/include -O3 -funroll-loops -I/public/home/zhaozengfang/software/expat/include -pthread -I/public/home/zhaozengfang/software/boost148//include -MT exp_flexer.o -MD -MP -MF .deps/exp_flexer.Tpo -c -o exp_flexer.o exp_flexer.cc
    exp_flexer.cc:325:25: error: no ?.nt EXPFlexLexer::yywrap()?.member function declared in class ?.XPFlexLexer?
    exp_flexer.cc: In member function ?.irtual int EXPFlexLexer::yylex()?.
    exp_flexer.cc:1313:19: error: ?.ywrap?.was not declared in this scope
    exp_flexer.cc: In member function ?.nt EXPFlexLexer::yyinput()?.
    exp_flexer.cc:1732:20: error: ?.ywrap?.was not declared in this scope
    make[2]: *** [exp_flexer.o] Error 1
    make[2]: Leaving directory `/public/home/zhaozengfang/software/mira-3.4.0.1/src/io'
    make[1]: *** [all-recursive] Error 1
    make[1]: Leaving directory `/public/home/zhaozengfang/software/mira-3.4.0.1/src'
    make: *** [all-recursive] Error 1
    ###########################

    There may be something wrong for flex. I’ve tried my best to fix the problem including add the new libs into environmental variables, but still failed.
    The config.log were attached, I’m grateful if you can give me some help.
    Attached Files
  • sklages
    Senior Member
    • May 2008
    • 628

    #2
    You might want to consult the MIRA mailing list. http://chevreux.org/mira_mailinglists.html


    Comment

    • qingdaoalbert
      Junior Member
      • Feb 2012
      • 4

      #3
      Thanks a lot for the information

      Comment

      • maubp
        Peter (Biopython etc)
        • Jul 2009
        • 1544

        #4
        It would have been nice to cross link your email and this thread:


        Originally posted by qingdaoalbert View Post
        There may be something wrong for flex.
        Yes.

        Comment

        • qingdaoalbert
          Junior Member
          • Feb 2012
          • 4

          #5
          Thanks a lot for the advices, the problem has been resolved following the information from http://www.freelists.org/post/mira_t...my-configlog,7

          Comment

          Latest Articles

          Collapse

          • mylaser
            Reply to Advanced Sequencing Platforms Tackle Neuroscience’s Toughest Genomics Problems
            by mylaser
            Kheloyar – Everything You Need to Know About Kheloyaar Login and Kheoyar Id
            If you are looking for an online gaming platform that offers a user-friendly experience, Kheloyar has become a name that many users search for. Whether you're interested in creating a new account, accessing your dashboard through Kheloyaar Login, or learning how to obtain a Kheoyar Id, understanding the platform's features and account process is essential.
            This guide explains everything you need to know about...
            Today, 01:13 AM
          • SEQadmin2
            Advanced Sequencing Platforms Tackle Neuroscience’s Toughest Genomics Problems
            by SEQadmin2



            Genomics studies in neuroscience face a special challenge due to the brain’s complexity and scarcity of samples. Mapping changes in cell type and state using conventional next-generation sequencing methods remains challenging. Advances in technologies like single-cell sequencing, spatial transcriptomics, and long-read sequencing have opened the door to deeper studies of the brain and diseases like Alzheimer’s, amyotrophic lateral sclerosis (ALS), and schizophrenia.
            ...
            07-09-2026, 11:10 AM
          • SEQadmin2
            Cancer Drug Resistance: The Lingering Barrier to Rising Survival
            by SEQadmin2



            Cancer survival rates have significantly increased in the last few decades in the United States, reaching a combined 70% 5-year survival rate by 2021. Behind this number, there are years of research to find new therapies, drug targets, and early detection methods. But there is one core challenge that keeps slowing down these advances, and it’s about drug resistance.

            There is no single reason why many patients don’t respond to treatment as expected. Cancer is...
            07-08-2026, 05:17 AM

          ad_right_rmr

          Collapse

          News

          Collapse

          Topics Statistics Last Post
          Started by SEQadmin2, 07-09-2026, 10:04 AM
          0 responses
          17 views
          0 reactions
          Last Post SEQadmin2  
          Started by SEQadmin2, 07-08-2026, 10:08 AM
          0 responses
          10 views
          0 reactions
          Last Post SEQadmin2  
          Started by SEQadmin2, 07-07-2026, 11:05 AM
          0 responses
          22 views
          0 reactions
          Last Post SEQadmin2  
          Started by SEQadmin2, 07-02-2026, 11:08 AM
          0 responses
          31 views
          0 reactions
          Last Post SEQadmin2  
          Working...