View Single Post
Old 03-15-2012, 06:13 PM   #3
turnersd
Senior Member
 
Location: Charlottesville, VA

Join Date: May 2011
Posts: 111
Default

As for #3, using a different tool/algorithm to analyze your data isn't independent validation. There's a long discussion in other threads here on the relative merits of DESeq vs something like cufflinks. Some of the older posts are out of date - coming from a time before cufflinks allowed biological replicates.
turnersd is offline   Reply With Quote