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Old 03-16-2012, 02:57 AM   #5
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Location: Charlottesville, VA

Join Date: May 2011
Posts: 112

To get at splicing, using cufflinks to look at different isoform expression or splicing load is a good place to start. But you can't then look at results from running DESeq on raw counts as independent validation. You need new data for that, or functional studies, qPCR, etc.
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