Unconfigured Ad

Collapse
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • sphil
    Senior Member
    • Apr 2010
    • 192
    #1

    GFF3 to GenBank convert

    Hey guys,

    i'm interested in a Java Parser which can write GFF3 Files into GenBank format. Can someone give me a hint where to find it, or isn't there anyone to download etc. ?

    I am to lazy cause i dont want to reinvent the wheel!


    regards

    sphil
    Tags: None
  • kbushley
    Member
    • Jan 2010
    • 22
    #2
    Hello,

    Did you ever find a solution for this...most programs seem to go the other way (ie. gbk to gff3)?

    Comment

    • sphil
      Senior Member
      • Apr 2010
      • 192
      #3
      i have written it by myself, though...

      Comment

      • kbushley
        Member
        • Jan 2010
        • 22
        #4
        Hello,

        well, i guess i may be doing the same...would you be willing to share your script...it may be a useful staring point. You can send by e-mail ([email protected]).

        Comment

        • sibabled
          Junior Member
          • May 2012
          • 1
          #5
          I would also like to have your script. Please email at [email protected].

          Comment

          Previous template Next

          Latest Articles

          Collapse
          • GATTACAT
            Reply to Nine Things a Sample Prep Scientist Thinks About Before Sequencing
            by GATTACAT
            Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
            07-01-2026, 11:43 AM
          • SEQadmin2
            Nine Things a Sample Prep Scientist Thinks About Before Sequencing
            by SEQadmin2


            I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.

            Here are nine questions we think about, in roughly the order they matter, before...
            06-18-2026, 07:11 AM
          View All

          ad_right_rmr

          Collapse

          News

          Collapse
          Topics Statistics Last Post
          High-Resolution Sequencing Exposes Hidden Toxoplasma Diversity by SEQadmin2
          Started by SEQadmin2, 07-02-2026, 11:08 AM
          0 responses
          20 views
          0 reactions
          		 Last Post SEQadmin2
          by SEQadmin2
          07-02-2026, 11:08 AM  
          New AI Model Captures Long-Range Genomic Signals to Improve RNA Splice Site Prediction by SEQadmin2
          Started by SEQadmin2, 06-30-2026, 05:37 AM
          0 responses
          21 views
          0 reactions
          		 Last Post SEQadmin2
          by SEQadmin2
          06-30-2026, 05:37 AM  
          Large-Scale Protein Screen Uncovers Hidden Regulators of Alternative Polyadenylation by SEQadmin2
          Started by SEQadmin2, 06-26-2026, 11:10 AM
          0 responses
          21 views
          0 reactions
          		 Last Post SEQadmin2
          by SEQadmin2
          06-26-2026, 11:10 AM  
          Whole-Genome Sequencing Traces Faroe Islands Ancestry to a North Atlantic Founder Population by SEQadmin2
          Started by SEQadmin2, 06-17-2026, 06:09 AM
          0 responses
          54 views
          0 reactions
          		 Last Post SEQadmin2
          by SEQadmin2
          06-17-2026, 06:09 AM  
          View All
          Working...