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Hello,
does anyone has a Perl script to convert BAM to BED format?
Thanks!
does anyone has a Perl script to convert BAM to BED format?
Thanks!
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Better to use BEDTools bamTobed utility -
See this thread for a previous discussion: http://seqanswers.com/forums/showthread.php?t=3574
Please note the command line bam2bed (using samtools and awk) suggested and the link to Heng Li's bam2bed which might provide the answers you need without actually having to crank up the perl interpreter.Comment
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hi any can tell me that how i convert PED file of HD SNP (777,960) data into TNT formate?Comment
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Data variability is still an issue in sequencing technologies despite the advances in reproducibility and accuracy of these platforms. But the problem does not originate in the sequencing itself, but in the previous steps, before the sample reaches the sequencer.
The first step is collection, followed by preservation and sample preparation for analysis. Most scientists overlook those steps, but not being careful might just be skewing the experiment’s results.
...06-02-2026, 10:05 AM -
With the launch of new single-cell sequencing platforms in 2026, the field stands at an exciting inflection point. This article surveys the most impactful advances in the field and discusses how they’re reshaping research in cancer, immunology, and beyond.
Introduction
Single-cell sequencing technologies have undergone remarkable advances over the past decade, transitioning from low-throughput experimental approaches to highly scalable platforms capable of...05-22-2026, 06:42 AM
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