How To make mapping density of bowtie alignments

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oxydeepu

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Join Date: Jul 2011

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How To make mapping density of bowtie alignments

04-29-2012, 11:48 PM

Hi all,

I have aligned the RNA-Seq reads generated in the lab to the transcriptome available using bowtie1. I want to make the wiggle tracks or mapping density of the reads to each contig. So that i can visualize the the alignment..
Please help. Badly need assistance.

Cheers
Deepak
Tags: bowtie, mapping density

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