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  • anna6832
    Junior Member
    • Jun 2012
    • 2

    #1

    Sequencing through high GC content repeat region

    I've sequenced a viral genome with the Illumina HiSeq but have some holes where there are repeat regions. The whole genome is 73% GC-rich so the repeats make it even harder to get through. I want to re-sequence these areas, does anyone have any suggestions or methods that helps get accurate sequence data from repeats with high GC content?

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