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  • Ddhamburger
    Junior Member
    • Jun 2012
    • 1

    RNAseq by PacBio

    Hi, all
    I was wondering if PacBio is an idea platform for RNAseq due to its long read length.
    Or Is it good to combine PacBio data with illumina's?
    Thanks
  • ECO
    --Site Admin--
    • Oct 2007
    • 1360

    #2
    For looking at isoforms of a small set of genes, almost definitely, pending you can make ds cDNA long enough.

    Almost certainly not enough tput to be useful for whole transcriptome.

    Comment

    • GenoMax
      Senior Member
      • Feb 2008
      • 7142

      #3
      PacBio is also going to be more expensive overall. Error rate with PacBio will cause problems unless you have other supplemental data (illumina, Solid etc) or a good reference sequence.

      Comment

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