Some problem in the output of CNVnator

[yuhao]

why I type
./cnvnator -root out1.root -view 100
>

just appears a ">" on the screen, out1.root is for chrom 1.

This problem happens when I use -genotype
./cnvnator -root out1.root -genotype 100
>

Anyone can give me some advise?Thx!

[gprakhar]

Hello,
This is from the CNVnator manual.

********
>>>VISUALIZING SPECIFIED REGIONS

./cnvnator -root file.root [-chrom chr_name1 ...] -view bin_size [-ngc]

Once prompted enter a genomic region, e.g.
>chr12:11396601-11436500
or
>chr12 11396601 11436500

Additionally one can specify length of flanking regions (default is 10 kb) to
be also displayed, e.g.
>chr12:11396601-11436500 100000
or
>chr12 11396601 11436500 100000

One can also perform instant genotyping by adding word 'genotype', e.g.
>chr12:11396601-11436500 genotype
or
>chr12 11396601 11436500 genotype