Sorting DESeq results

kvk727

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Join Date: Jan 2013

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Sorting DESeq results

03-18-2013, 01:20 PM

Hi All,
I would like to sort my DESeq (or edgeR) results based on different classes of genes (ie, call out all transcription factors represented in my differentially expressed resSig file). Does anyone know a way to do this?

Furthermore, is it possible to plot these different groups of genes in different colors in the plotMA or plotPCA commands?

Thanks so much in advance for the help, it is greatly appreciated!
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