Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • #1

    Anyone know a program to detect duplicated regions?

    Hi All,

    I'm working with on generating denovo mtDNA genomes for many species of an invertebrate taxa of the same genus. These critters have a duplicated non-coding region (~800bp) separated by ~6000bp, the problem is that the non-coding region is different in every species. Since this is not a tandem repeat, and is quite large, the microsatellite finding programs are of no use. Anyone know a program that can find these large duplicated regions?

    Cheers,
    Tags: duplication, mitochondrial genome, mtdna, software
  • #2
    Why do not use Blast? If the query and the database are the same, it will find all the duplicated regions.
    Last edited by TiborNagy; 06-19-2014, 05:54 AM. Reason: misstype

    Comment

    Previous template Next

    Latest Articles

    Collapse
    • seqadmin
      Essential Discoveries and Tools in Epitranscriptomics
      by seqadmin




      The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
      04-22-2024, 07:01 AM
    • seqadmin
      Current Approaches to Protein Sequencing
      by seqadmin


      Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
      04-04-2024, 04:25 PM
    View All

    ad_right_rmr

    Collapse

    News

    Collapse
    Topics Statistics Last Post
    Genetic Variants and Diabetes Risk in Childhood Cancer Survivors by seqadmin
    Started by seqadmin, Today, 08:47 AM
    0 responses
    12 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    Today, 08:47 AM  
    Cancer Metastasis: A Deep Dive into Cellular Plasticity by seqadmin
    Started by seqadmin, 04-11-2024, 12:08 PM
    0 responses
    60 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    04-11-2024, 12:08 PM  
    Proteogenomic Profiles Offer New Clues in Prostate Cancer by seqadmin
    Started by seqadmin, 04-10-2024, 10:19 PM
    0 responses
    59 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    04-10-2024, 10:19 PM  
    Novel Diagnostic Assay Enhances Ovarian Cancer Detection by seqadmin
    Started by seqadmin, 04-10-2024, 09:21 AM
    0 responses
    54 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    04-10-2024, 09:21 AM  
    View All
    Working...
    X