View Single Post
Old 11-18-2013, 02:27 PM   #13
GenoMax
Senior Member
 
Location: East Coast USA

Join Date: Feb 2008
Posts: 6,749
Default

Quote:
Originally Posted by sindrle View Post
So, how to do that? :P
Have a look at the Table Browser tutorial: http://genome.ucsc.edu/goldenPath/he...ablesHelp.html You will finally want to select data in BED format for output.

You can get the UCSC, CCDS, RefSeq, Ensembl, VEGA, MGC genes by choosing the right tables to query against.

That can be followed by BEDTools intersectBed (or an appropriate other option): http://bedtools.readthedocs.org/en/l...intersect.html
GenoMax is offline   Reply With Quote