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Old 04-02-2014, 01:59 AM   #67
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Join Date: Feb 2014
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Originally Posted by dpryan View Post
It doesn't matter which one you pick, they'll all be only vaguely meaningful at best...that's the problem with not having replicates.
Sorry, I didn't say it clearly, what I mean is the real dataset with replicate. Of course the ranking of TOP1000 DE genes are different from cuffdiff/Deseq/edgeR/Gfold/limma...... So I said do I need to do 3-5 simultaneously and then compare the overlap? The method with the biggest overlap is the best one? Cheers.
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