Could anyone please enlighten me on the right format to specify options for BreakDancerMax?
I've tried various ways of putting up options for BreakDancerMax:
% BreakDancerMax.pl config.list -o -e -r 10 > brd1.out
% BreakDancerMax.pl -o -e -r 10 config.list > brd1.out
and even tried putting them into the config file.
None of these seem to respond by giving an output with a minimum read count of 10 for each SV (-r 10).
Thanks.
I've tried various ways of putting up options for BreakDancerMax:
% BreakDancerMax.pl config.list -o -e -r 10 > brd1.out
% BreakDancerMax.pl -o -e -r 10 config.list > brd1.out
and even tried putting them into the config file.
None of these seem to respond by giving an output with a minimum read count of 10 for each SV (-r 10).
Thanks.
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