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Old 07-14-2009, 01:40 PM   #20
bioinfosm
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Location: USA

Join Date: Jan 2008
Posts: 482
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Any luck with soap on indels?
I tried it on my paired-end data, but soapsnp ends up in segmentation fault!
I think I did fine on the sort (confused about sorting a paired end alignment on coordinates!) .. does soap not use the information of pairs after mapping them!
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