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Old 06-26-2011, 04:29 AM   #1
Location: united kingdom

Join Date: Feb 2010
Posts: 63
Smile What should be included to make a good transcriptome/RNA-seq paper?

Dear All,
I have done analyses on RNA-seq data that finds putative isoforms, differentially expressed genes/isoforms and gives a more complete picture of a tissues transcriptome.

I was wondering if anyone had any ideas on what is a "must have" inside a good transcriptome paper.

I have dabbled with bowtie/tophat/cufflinks/deseq,edgeR,DEGSeq and some others packages and now it is time to write something up.

It seems there are many options and things I could include out there and I would be interested in some views from other transcriptomers.

Thank you,

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