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Old 11-26-2012, 03:42 PM   #2
Peppe
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Location: USA

Join Date: Nov 2012
Posts: 11
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Hello Jim,
I see you are at the JGI and I though to ask you an advice/question. I am performing RNAseq analysis using a yeast whose genome sequence is available on the JGI website. I downloaded both the unmasked genome and the annotation file. I need the annotation file for the cufflink and cuffcompare steps, but the problem that I have is that the downloaded file is in gff and galaxy (the public server for analyzing NGS data) accepts only gtf files. Do you have any contact there that can help me?
Thanks
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