Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Deleterious information in dbSNP

    Hello everyone,
    How could I obtain the SNPs which are deleterious in the dbSNP?

    Is the recent versions of dbSNP containing the deleterious information if the SNP sites is deleterious?


    Thanks a lot!

  • #2
    ftp://[email protected]

    SNPs with alternate allele shorter than the reference allele are deletions

    Comment


    • #3
      Originally posted by ymc View Post
      ftp://[email protected]

      SNPs with alternate allele shorter than the reference allele are deletions
      thanks for you reply~

      my purpose is to obtain the deleterious snp sits.

      Any body knows ?


      Many thanks~

      Comment


      • #4
        Originally posted by genelab View Post
        thanks for you reply~

        my purpose is to obtain the deleterious snp sits.

        Any body knows ?


        Many thanks~
        snp position is also in the vcf file

        Comment


        • #5
          Based on my understanding of your question, do this:

          Go to: http://www.ncbi.nlm.nih.gov/snp/limits

          Choose organism and then under annotation, check "clinical/lsdb submissions" and also choose "pathogenic" and "probably pathogenic". Hit Search.

          You can download it in a format you want using "display settings" on left top.

          Comment

          Latest Articles

          Collapse

          • seqadmin
            Strategies for Sequencing Challenging Samples
            by seqadmin


            Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
            03-22-2024, 06:39 AM
          • seqadmin
            Techniques and Challenges in Conservation Genomics
            by seqadmin



            The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

            Avian Conservation
            Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
            03-08-2024, 10:41 AM

          ad_right_rmr

          Collapse

          News

          Collapse

          Topics Statistics Last Post
          Started by seqadmin, Yesterday, 06:37 PM
          0 responses
          10 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, Yesterday, 06:07 PM
          0 responses
          9 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 03-22-2024, 10:03 AM
          0 responses
          51 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 03-21-2024, 07:32 AM
          0 responses
          67 views
          0 likes
          Last Post seqadmin  
          Working...
          X