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Old 04-22-2011, 05:54 PM   #5
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Location: US

Join Date: Sep 2010
Posts: 8

Originally Posted by gridbird View Post
I don't know the corresponding between contigs and scaffold contigs. how do I write script? what is the input of this script?
If the contigs are in Pcap format its kind of easy to indentify the contig - scaffold relationship.

Contig5.1, Contig5.2..... should belong to Scaffold5. Something similar to that. This can be customizable for other formats if you have scaffolding information I guess.
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