Quote:
Originally Posted by gridbird
I don't know the corresponding between contigs and scaffold contigs. how do I write script? what is the input of this script?
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If the contigs are in Pcap format its kind of easy to indentify the contig - scaffold relationship.
Contig5.1, Contig5.2..... should belong to Scaffold5. Something similar to that. This can be customizable for other formats if you have scaffolding information I guess.