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Old 07-24-2014, 10:43 AM   #4
GenoMax
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Location: East Coast USA

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Was that with metavelvet (http://metavelvet.dna.bio.keio.ac.jp/) or regular velvet? Since this is a metagenomic sample you should use an assembler that is designed for that purpose. Ray-meta, MetAMOS look like other options.
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