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Old 01-11-2015, 04:00 PM   #4
GenoMax
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Location: East Coast USA

Join Date: Feb 2008
Posts: 7,061
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Quote:
Originally Posted by arkilis View Post
Thanks GenoMax.
I have the KIR gene database, need to get the what it has (KIR) in the sequence files. Any clue on this?
Can you elaborate as to what "database" here means? You have KIR genes sequences but in what format (plain text, blast, one of NGS aligner index format)?

BBSplit uses alignments to identify reads that map to sequences of interest and then separate them (this can work the other way around as well i.e. you discard reads that map as being uninteresting and collect unmapped reads to process further).
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