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Old 07-21-2015, 03:57 PM   #3
arkilis
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Location: Australia

Join Date: Jul 2013
Posts: 119
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Quote:
Originally Posted by GenoMax View Post
Classic E. coli reference strain is E. coli K-12 strain MG1655 sequenced for the first time by Blattner et al in 1997. That strain is available here: http://www.ncbi.nlm.nih.gov/nuccore/U00096.3 (this may be equivalent to: ftp://ftp.ncbi.nih.gov/genomes/Bacte...1655_uid57779/)

That said you should ask the person you are working with as to what strain you should use for the analysis.
Thank you GenoMax, so there is no generic one for alignment. I cannot find the person who submit the sequence, he left without a doc. So I was thinking to download all of them and align them one by one. Not quite sure I am doing the right thing?

Cheers,
Ben
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