View Single Post
Old 07-09-2010, 11:57 AM   #4
raela
Member
 
Location: Ithaca, NY

Join Date: Apr 2010
Posts: 39
Default

Ah yes, didn't think about that, either.. I'm in the same boat, I've been hosting on my own network. One thing that helps me is filtering out unmatched reads, even if only for viewing on UCSC. I aligned to chromosomes in a genome, so all of my references were chr*. To filter, I did grep chr file.sam > file.noun.sam, then generated bam files from there.
raela is offline   Reply With Quote