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Old 08-20-2009, 10:13 AM   #2
jwhittall
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Location: Santa Clara, CA

Join Date: Aug 2009
Posts: 2
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Tom,

No answer here, but I'm in a similar boat and was waiting to see if anyone had an answer to your question. I've got a mustard that is 85-90% similar in nucleotide sequences of coding regions to Arabidopsis thaliana. I think I'll need to assemble de novo, then tBlastx my contigs to the Arabidopsis unigenes. Has anyone tried this for transcriptomes of non-model (but close to model) systems?

Justen
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