Hi, I am a newbie in bioinformatics. I am trying to use bowtie to map a set of sequences. Here is the result I have got.
Time loading forward index: 00:00:12
Time loading mirror index: 00:00:13
Seeded quality full-index search: 07:49:33
# reads processed: 440372
# reads with at least one reported alignment: 193962 (44.05%)
# reads that failed to align: 246410 (55.95%)
Reported 1903683060 alignments to 1 output stream(s)
Time searching: 07:49:58
Overall time: 07:49:59
Is there a way to display more information than it is above? For example, the percentage of reads that are uniquely mapped. Thanks.
Time loading forward index: 00:00:12
Time loading mirror index: 00:00:13
Seeded quality full-index search: 07:49:33
# reads processed: 440372
# reads with at least one reported alignment: 193962 (44.05%)
# reads that failed to align: 246410 (55.95%)
Reported 1903683060 alignments to 1 output stream(s)
Time searching: 07:49:58
Overall time: 07:49:59
Is there a way to display more information than it is above? For example, the percentage of reads that are uniquely mapped. Thanks.
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