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Old 11-08-2009, 02:13 PM   #3
pfh
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Location: Melbourne

Join Date: May 2008
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I've written some software that can do this for bacteria. Doesn't work with eukaryotes though, various scalability issues yet to be overcome. http://www.vicbioinformatics.com/software.nesoni.shtml

The approach I took was just to generate all the before and after protein sequences and look for differences. Pretty easy to do in BioPerl/BioPython/etc.
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