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Old 08-12-2014, 07:01 AM   #4
Devon Ryan
Location: Freiburg, Germany

Join Date: Jul 2011
Posts: 3,480

Well expressed is very different from DE. It's not surprising to find fewer DE transcripts for the reasons I mentioned in my first post (I don't remember if cuffdiff looks at genes with only 1 transcript in the transcript output, but if not then that'd further decrease things).
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