Thread: Tophat Run time
View Single Post
Old 09-17-2013, 10:59 PM   #12
Location: Taiwan

Join Date: Feb 2011
Posts: 19

20.8G bases (104M reads, Pair End) 1 node (16 cores) AMD 2.4GHz 96G ram
- 28 hours
Tophat 2 runs best with 16 cores ( single node) according to our tests otherwise it takes longer.
STAR runs much faster ( less than 40 minutes) but needs a lot more memory (64 cores 128G ram).
adamyao is offline   Reply With Quote