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Old 06-18-2015, 07:48 AM   #1
umamayil
Junior Member
 
Location: newark, NJ

Join Date: Jun 2015
Posts: 3
Default RNA_seq read separation help

Hi to everyone,

I am new member to this forum. I have 100bp single read illumina fastq files. When we looked at the reads we saw some interesting sequences. We want to separate those reads and write it in separate fastq file for analysis. For example we want to separate "ATTTTTTTTAGAAAAAAAA" containing reads (we saw something around 2million reads out of 9million reads). Can you please give me guidance how to do it. IF there is program or any unix commands will be helpful. I am not a unix person. please give me commands to execute.

Thanks a lot.
Mayil
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