View Single Post
Old 06-18-2015, 10:12 AM   #1
cmccabe
Senior Member
 
Location: chicago

Join Date: Jul 2012
Posts: 354
Default bedtools command output

Not sure what the output of this command means, but I am trying to get the average coverage per bait in a bed file. Thank you .

Code:
 coverageBed -hist -abam IonXpress_009_150603.bam -b epilepsy70_medex.bed | grep ^all > output.hist.all.txt
Code:
all	0	188	195018	0.0009640
all	1	148	195018	0.0007589
all	2	175	195018	0.0008974
Attached Files
File Type: gz output.hist.all.txt.tar.gz (6.3 KB, 0 views)
cmccabe is offline   Reply With Quote