I did tblastn analysis by following command
HTML Code:
tblastn -query t3ss.fasta -subject org1.fasta -outfmt '6 qseqid qstart qend sseqid sstart send pident length evalue sseq' -out org1.xls
It prints the subject coordinates and translated amino acid sequences etc., Is there any way to print the DNA sequences of subject organism in tblastn?